Establishing this important connection between genotype and phenotype is complicated by the large number of candidate genes, the potentially large number of causal loci, and the likely presence of some nonlinear. The phase diagram of noiseless compressed sensing changes intriguingly when only the absolute value of the output is measured, i. Knowing the precise limits to such undersampling is important both for theory and practice. During a phase transition of a given medium, certain properties of the medium change, often discontinuously, as a result of the. It depicts that two areas are formed, representing the probability of 0 and 1. Phases and phase transitions as in compressed sensing or in matrix factorization, the analysis of the free entropy and state evolution equations. Accurate prediction of phase transitions in compressed sensing via a connection to minimax. Jun, 2015 we introduce phase diagram analysis, a standard tool in compressed sensing cs, to the xray computed tomography ct community as a systematic method for determining how few projections suffice for accurate sparsityregularized reconstruction. Accurate prediction of phase transitions in compressed sensing. A phase of a thermodynamic system and the states of matter have uniform physical properties. Deterministic matrices matching the compressed sensing phase. In compressed sensing, one takes samples of an ndimensional vector using an matrix a, obtaining undersampled measurements. We establish rigorously the intrinsic informationtheoretic limitations of inference and learning for a class of randomly generated instances. Compressed sensing phase retrieval albert fannjiang, wenjing liao department of mathematics uc davis, ca 956168633.
Optimal phase transitions in compressed sensing yihong wu, and sergio verdu. The broken symmetry is described by an order parameter which usually increases on moving deeper into the ordered phase, and which measures the degree of order as the phase transition proceeds. Evaluating the statistical dimension is a common tool to determine the asymptotic phase transition in compressed sensing problems with gaussian ensemble. Probabilistic reconstruction in compressed sensing. The purpose of study a is to put the ct phasetransition behaviour we observed in 22,23 more clearly into context of cs theory. A compressed sensing based basispursuit formulation of. This is related to the notion of a phase transition in the compressive sensing literature 23, 26. Section 2 discusses the compressed sensing phase retrieval problem in detail. Deterministic matrices matching the compressed sensing phase transitions of gaussian random matrices hatef monajemia, sina jafarpourb, matan gavishc, stat 330cme 362 collaboration1, and david l.
Suitable random illumination eliminates all sources of ambiguity, trivial and nontrivial. This diagram shows the nomenclature for the different phase transitions. Phase diagram for the considered case study obtained from the state evolution, eq. The phase transition phenomenon in compressed sensing. We refer the reader to pioneering work by donoho and collaborators 17. Compressed sensing phase retrieval with phase diversity.
This is interesting from an applicative point of view since it allows to model a novel class of imaging devices which can potentially have improved resolution with respect to traditional operators e. We present a formula that characterizes the allowed undersampling of generalized sparse objects. Compressed sensing posits that, within limits, one can undersample a sparse signal and yet reconstruct it accurately. By exploiting prior knowledge of the compressibility of many naturally. The phase diagram is a function of sparsity s and sample size n rescaled by dimensionality p. A compressed sensing based basispursuit formulation of the. In compressed sensing, one takes n phase transitions a phase transition is an abrupt, discontinuous change in the properties of a system. The phase transition properties of compressed sensing algorithms are underappreciated, especially so given their practical utility. The classical example of a phase transition is the condensation of a gas into a liquid. The formula applies to approximate message passing amp algorithms for compressed. Fellow, ieee abstractcompressed sensing deals with ef.
We report extensive experiments showing that the gaussian phase transition also describes numerous deterministic matrices, including spikes and sines, spikes and noiselets, paley frames, delsartegoethals frames, chirp sensing matrices, and grassmannian frames. Phase transitions often involve the development of some type of order with an associated symmetry breaking. Mar 19, 2019 highdimensional generalized linear models are basic building blocks of current data analysis tools including multilayers neural networks. Compressed sensing cs is an important recent advance that shows how to reconstruct sparse high. For random matrices with independent standard gaussian entries, it is known that, when is ksparse, there is a precisely determined phase transition. Compressed sensing this chapter details an important class of inverse problems, which corresponds to using \random forward operators. Some important features of the liquidgas condensation transition are. Phase transitions and phase diagrams university of virginia. Determination of nonlinear genetic architecture using. Pdf on the error in phase transition computations for. In that case, we had to look fairly closely to see the discontinuity. These diagrams display the probability of success as function of the number of samples and nonzero coefficients of the signal. Phase transition diagrams in compressive sensing computation and analysis. Mse3050,phasediagramsandkinetics,leonidzhigilei phase transitions and phase diagrams onecomponent systems enthalpyandentropydependenceonpandt.
Abstract compressed sensing is designed to measure sparse signals directly in a. Blind calibration in compressed sensing using message. In two phase region draw the tie line or isotherm 3. Jan 22, 20 in compressed sensing, one takes samples of an ndimensional vector using an matrix a, obtaining undersampled measurements.
Blind calibration in compressed sensing using message passing. Note that for the blind calibration problem to be solvable, we need the amount of information contained in the sensor readings, pm. One of the fundamental problems of modern genomics is to extract the genetic architecture of a complex trait from a data set of individual genotypes and trait values. Below the phase transition curve, we recover the signal exactly with probability almost 1. If for a given f, the value of is greater than the phase transition value c f, then l1 minimization typically yields perfect signal reconstruction ganguli and sompolinsky, 2012. The noisesensitivity phase transition in compressed sensing. Donohoc,2 departments of acivil and environmental engineering and cstatistics, stanford university, stanford, ca 943054065. On phase transition of compressed sensing in the complex domain zai yang, cishen zhang, and lihua xie, fellow, ieee abstractthe phase transition is a performance measure of the sparsityundersampling tradeoff in compressed sensing cs. They arise in signal processing, statistical inference, machine learning, communication theory, and other fields. In the numerical study we observe a sharp phase transition generalizing the phase transition seen for amp in compressed sensing 21. In general, obviously, we need n linearly independent samples of an image to recover x. In cs, a phase diagram is a convenient way to study and express certain theoretical relations between.
What cs says is that if the image x is sufficiently sparse then by. Abstractcompressed sensing is designed to measure sparse signals directly in a. How to scale phase transition diagram for compressed sensing. Given this result, simulations can be used to predict the sample size threshold for future genomic analyses. Optimal phase transitions in compressed sensing request pdf. Optimal phase transitions in compressed sensing with noisy. We finally conclude the results from the numerical experiment. Shortterm memory in neuronal networks through dynamical. This paper presents a statistical study of compressed sensing by modeling the input signal as an i. The four fundamental phase transitions for compressed sensing with gaussian matrices in a. Deterministic matrices matching the compressed sensing. In applications with real data the phase transition can be detected from the behavior of the algorithm as the amount of data n is varied. Abstract theory of absolute uniqueness for phase retrieval with random illumination is presented. Ups delivers optimal phase diagram in high dimensional variable selection by pengsheng ji, jiashun jin.
Accurate prediction of phase transitions in compressed sensing via a connection to minimax denoising article pdf available in ieee transactions on information theory 596 november 2011 with. Optimal phase transitions in compressed sensing with noisy measurements yihong wu and sergio verdu. We introduce phasediagram analysis, a standard tool in compressed sensing cs, to the xray computed tomography ct community as a systematic method for determining how few projections suf. Pdf accurate prediction of phase transitions in compressed. Here, we outline only the main aspects of this phase transition further details are provided in the e xtended version of the notes.
Such an output channel is reminiscent of the widely studied phase retrieval problem where the signal is complex valued and only the amplitude is observed the generalization of our results for. Accurate prediction of phase transitions in compressed sensing via a connection to minimax denoising david donoho. We show the existence of two different types of phase transition and their implications for the solvability of the problem, and we compare the results of our theoretical analysis to. The term phase transition or phase change is most commonly used to describe transitions between solid, liquid, and gaseous states of matter, as well as plasma in rare cases. For sensing matrices with iid entries there is a region of parameters signal sparsity, undersampling rate and measurement noise in. Fellow, ieee abstract compressed sensing deals with ef. In compressed sensing, one takes n compressed sensing posits that, within limits, one can undersample a sparse signal and yet reconstruct it accurately.
This diagram shows the empirical probability that the 1 minimization method 1. Chapter 8 2 phase diagram and degrees of freedom a phase diagrams is a type of graph used to show the equilibrium conditions between the thermodynamicallydistinct phases. Here, we outline only the main aspects of this phase transition further details are provided in. Ising model displays a nite temperature phase transition between a ferromagnetically ordered phase at low temperatures, and a paramagnetic phase at high temperatures. Abstract compressed sensing cs is a novel approach to collecting and analyzing data of all types. The crystalline phase transition, also known as the martensitic phase transition, is a diffusionless, solidtosolid phase transition where the lattice or molecular structure changes. Using both the bp reconstruction algorithm and the asymptotic analysis we study the phase diagram and. Weve already seen one example of a phase transition in our discussion of boseeinstein condensation.
Image reconstruction, classi cation, and tracking for. More generally, we will refer to conditions under which p e 1 as strong impossibility. On phase transition of compressed sensing in the complex. At the beginning of a high temperature phase, the atoms are arranged in a square lattice as shown in fig. The manifest differences in the properties of the phases must then appear as discontinuities in some derivatives of g. The field of cs addresses precisely the question of how few samples one can acquire and still provably recover the image.
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